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Work with data/code
Work with code
- Free programming books – a git list of free programming books
- CDE Tool – Deploy and run your Linux programs on other machines without any installation or configuration.
- Dexy – Helps your code to speak for itself with beautiful syntax highlighting.
- GitLab – A git repository management, code reviews, issue tracking and wiki's all in one platform.
- iPython notebook – Interactive computational environment that allows code execution, text, mathematics, plots, and rich media.
- Kepler – Helps create, execute, and share models and analyses across scientific and engineering disciplines.
- Mercurial – Control management tool with distributed source, giving each developer a local copy of the development history.
- nanoHUB – Centralized platform for computational nanotechnology research, education, and collaboration.
- ROpenSci – Packages that allow access to data repositories through the R statistical programming environment.
- Sweave – Allows to embed the R code for complete data analyses in latex documents
- System in Cloud – Platform, enabling clients to rapidly draw and execute data-flow diagram that run in cloud.
Work with data
- Benchling – Life science data management and collaboration platform.
- Castor EDC – User friendly and affordable online data collection for medical research.
- Dat Data – Open source, decentralized data tool for distributing datasets small and large.
- Datasearch – Search for datasets across a range of disciplines.
- Galaxy Project – Web-based platform for data intensive biomedical research.
- GenePattern – Genomic analysis platform that provides access to hundreds of genomics tools.
- GenomeCompiler – Genetic design platform allowing researchers to manipulate and design everything from single genes to entire genomes.
- InSIlico DB – Genomics made possible for biologists without programming.
- Kaggle – Platform for data prediction competitions.
- Kitware – Advanced software solutions and services for data intensive R&D
- mloss – Machine learning open source software.
- MyExperiment – Share workflows and in silico experiments
- nanoHUB – Centralized platform for computational nanotechnology research, education, and collaboration.
- Ovation - Simplifies your scientific life from sample tracking for startup labs to data management.
- PCR Drive - Free platform that supports researchers in all their PCR-related processes.
- Pegasus – Platform that help workflow-based applications execute.
- Plotly – Online tool to graph and share data.
- Riffyn - Cloud software for visual, collaborative, reproducible innovation.
- ROpenSci – Packages that allow access to data repositories through the R statistical programming environment.
- Statcrunch – Provides data analysis via the Web.
- Sumatra – Automated electronic lab notebook for computational projects
- SURF In context – Navigate through RDF relations in a smooth and understandable way.
- Sweave – Allows to embed the R code for complete data analyses in latex documents.
- System in Cloud – Platform, enabling clients to rapidly draw and execute data-flow diagram that run in cloud.
- Tableau – Easily and quickly analyze and present data and share insights.
- Taverna – A suite of tools used to design and execute scientific workflows.
- VisTrails – Scientific workflow and provenance management system that supports data exploration and visualization.
- Wakari – Web-based python data analysis.
- WebPlotDigitizer – Web based tool to extract data from plots, images, and maps. (blog post)
- Wings – Semantic workflow system that assists scientists with the design of computational experiments.
- Wolfram Alpha – Web-based tools for scientific calculations.
- World Map – Allows users to explore, visualize, edit, collaborate with, and publish geospatial information.